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AR-Status Dashboard: Androgen Receptor Pathway Deactivation Tracker for Prostate Cancer

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AR-Status Dashboard: Androgen Receptor Pathway Deactivation Tracker for Prostate Cancer

AR-Status Dashboard: Androgen Receptor Pathway Deactivation Tracker for Prostate Cancer Loss of canonical AR signaling correlates with prostate cancer progression, raising the concern that androgen deprivation therapy may paradoxically promote escape in tumors where AR is already deactivated. Build a clinical evidence aggregator and visualization dashboard that synthesizes published data

By Dan Manning
ChemoSense TNBC: A Pre-Treatment Biomarker Screener for Triple-Negative Breast Cancer Chemoresistance

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ChemoSense TNBC: A Pre-Treatment Biomarker Screener for Triple-Negative Breast Cancer Chemoresistance

ChemoSense TNBC: A Pre-Treatment Biomarker Screener for Triple-Negative Breast Cancer Chemoresistance Pre-treatment biopsies from TNBC patients show distinct proteomic and metabolomic signatures — particularly SIRT5 overexpression — that predict de novo chemoresistance before a single dose of treatment is given. The ability to predict chemotherapy resistance before treatment starts is one of

By Dan Manning
PedBrainTarget: A Drug-Target Interaction Tracker for Pediatric Brain Cancer Stem Cell Pathways

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PedBrainTarget: A Drug-Target Interaction Tracker for Pediatric Brain Cancer Stem Cell Pathways

PedBrainTarget: A Drug-Target Interaction Tracker for Pediatric Brain Cancer Stem Cell Pathways A REST-AKT-SOX2 regulatory axis maintains therapy-resistant stem/progenitor cells in Sonic Hedgehog medulloblastoma — and both AKT inhibitors and Midkine inhibitors with clinical-stage compounds already exist. Pediatric brain tumors are difficult to treat partly because of the disconnect between

By Dan Manning
TLS-Scope: An Open-Source Spatial Transcriptomics Pipeline for Tertiary Lymphoid Structure Classification

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TLS-Scope: An Open-Source Spatial Transcriptomics Pipeline for Tertiary Lymphoid Structure Classification

TLS-Scope: An Open-Source Spatial Transcriptomics Pipeline for Tertiary Lymphoid Structure Classification A hierarchical graph neural network operating on spatial transcriptomics data can classify tertiary lymphoid structures as immunogenic or tolerogenic — a distinction with direct implications for predicting immunotherapy response that bulk RNA analysis cannot make. The AI model described in

By Dan Manning